FeaturePlot_cust: Generate a FeaturePlot_cust which is a scatter plot with gene...
In eisascience/scCustFx: single-cell custom fxs Package

FeaturePlot_cust

R Documentation

Generate a FeaturePlot_cust which is a scatter plot with gene expression as color scale

Description

This function generates a scatter plot of the specified dimensions (features) of a Seurat object, colored by expression values of the specified feature.

Usage

FeaturePlot_cust(
  SerObj,
  dim1,
  dim2,
  pt.size = 1,
  group.by,
  Feat,
  colors = c("white", "gray", "gold", "red", "maroon"),
  base_size = 14
)

Arguments

`SerObj`	A Seurat object containing the data to plot
`dim1`	Name of the first feature to plot on the x-axis
`dim2`	Name of the second feature to plot on the y-axis
`pt.size`	Point size for the plot (default: 1)
`group.by`	Name of the grouping variable for the plot (optional)
`Feat`	Name of the feature to use for coloring the plot
`colors`	Vector of colors for the color gradient (default: c('white', 'gray', 'gold', 'red', 'maroon'))
`base_size`	Base font size for the plot (default: 14)