FilterSpatial: Filter Spatial data and plot before and after cell loss

In eisascience/scCustFx: single-cell custom fxs Package

Filter Spatial data and plot before and after cell loss

Description

Filter Spatial data and plot before and after cell loss

Usage

FilterSpatial(
  SerObj,
  nCount_Spatial_max = 1000,
  nFeature_Spatial_min = 20,
  nFeature_Spatial_max = 700,
  percent.mt_max = 10
)

Arguments

SerObj	A SerObj
nCount_Spatial_max	pnCount_Spatial_max
nFeature_Spatial_min	pnCount_Spatial_max
nFeature_Spatial_max	pnCount_Spatial_max
percent.mt_max	pnCount_Spatial_max

Value

a Seurat object for Spatial SlideSeq data

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.