ImputeSDA2SerV2: This function to add imputed scores from gene loading

In eisascience/scCustFx: single-cell custom fxs Package

This function to add imputed scores from gene loading

Description

This function to add imputed scores from gene loading

Usage

ImputeSDA2SerV2(
  SerObj,
  sda_loadings,
  keepComps = NULL,
  sdaObjID = "",
  plot = F,
  doAsinh = T,
  MakeReduc = T,
  assay = "RNA"
)

Arguments

SerObj	A seurat Object, with assay RNA and slot data
sda_loadings	matrix of sda loadings
keepComps	if NULL all else numeric or char vec
sdaObjID	id name to apped to comp names
plot	to plot or not
assay	Default "RNA" can be "SCT", etc

Value

seurat obj with new SDA score comps in metadata

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.