ImputeSDA2SerV3: This function to add imputed scores from gene loading, V3 is...

In eisascience/scCustFx: single-cell custom fxs Package

This function to add imputed scores from gene loading, V3 is one component at a time selecting topN genes

Description

This function to add imputed scores from gene loading, V3 is one component at a time selecting topN genes

Usage

ImputeSDA2SerV3(
  SerObj,
  sda_loadings,
  keepComps = NULL,
  sdaObjID = "",
  plot = F,
  doAsinh = T,
  TopNpos = 20,
  TopNneg = 20,
  MetaExtraName = ""
)

Arguments

SerObj	A seurat Object, with assay RNA and slot data
sda_loadings	matrix of sda loadings
keepComps	if NULL all else numeric or char vec
sdaObjID	id name to apped to comp names
plot	to plot or not

Value

seurat obj with new SDA score comps in metadata

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.