LoadSCE_ReturnSer: load a h5ad SCE object and convert to seurat

In eisascience/scCustFx: single-cell custom fxs Package

load a h5ad SCE object and convert to seurat

Description

load a h5ad SCE object and convert to seurat

Usage

LoadSCE_ReturnSer(
  SCE_h5ad_file,
  ReturnRawSer = T,
  SER_rds_file,
  verbose = T,
  nCount_Spatial_max = 1000,
  nFeature_Spatial_min = 20,
  nFeature_Spatial_max = 700,
  percent.mt_max = 10,
  LogNorm = F
)

Arguments

SCE_h5ad_file	path to h5ad file
ReturnRawSer	if T no normalization or filtering is done
SER_rds_file	path to save rds of ser obj
verbose	to print and plot or not T/F

Value

a Seurat object for Spatial SlideSeq data

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.