NormalizeAndScaleV2: NormalizeAndScaleV2 a customized version from CellMembrane

In eisascience/scCustFx: single-cell custom fxs Package

NormalizeAndScaleV2 a customized version from CellMembrane

Description

This is the entry point for processing raw scRNAseq data with Seurat & CellMembrane.

Usage

NormalizeAndScaleV2(
  SerObj,
  variableFeatureSelectionMethod = "vst",
  nVariableFeatures = 2000,
  mean.cutoff = c(0.0125, 3),
  dispersion.cutoff = c(0.5, Inf),
  block.size = 1000,
  normalization.method = "LogNormalize",
  Regress_basic = F,
  Regress_pmito = T
)

Arguments

SerObjLS

A named list of Seurat object.

Value

Normalized and scaled seurat object

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.