Plot_SDAScoresPerFeature_ser: Plot a heatmap of tabulation of SDA score vs meta

In eisascience/scCustFx: single-cell custom fxs Package

Plot a heatmap of tabulation of SDA score vs meta

Description

THis fx makes a heatmap tabulating SDA scores within a seurat obj metadata

Usage

Plot_SDAScoresPerFeature_ser(
  SerObj,
  componentNames,
  direction = "Both",
  doASINH = F,
  sdThr = 0.2
)

Arguments

SerObj	A Seurat object containing SDA scores to use for the reduction.
componentNames	a vector of meta features, the first is the tabulation meta the rest are sda scores... e.g. componentNames = c("ClusterNames_0.4", sdaComps[1:10])
direction	direction to inspect
doASINH	boolean to do asinh transformation of residuals or not default F
sdThr	threshold to show sd on col labs default 0.2

Value

a complex heatmap

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.