ProduceComboHeatmapFromMatrix: Produce Combo Heatmap From Matrix
In eisascience/scCustFx: single-cell custom fxs Package

ProduceComboHeatmapFromMatrix

R Documentation

Produce Combo Heatmap From Matrix

Description

This function produces a combination heatmap from a matrix using Seurat object.

Usage

ProduceComboHeatmapFromMatrix(
  SerObj,
  mat,
  markerVec,
  pairedList,
  pairedList2,
  labelColumn,
  prefix,
  adtoutput = "unpaired",
  rowsplit = NULL,
  columnsplit = NULL,
  size,
  coldend = TRUE,
  rowdend = TRUE,
  coldendside = "bottom",
  rowdendside = "left",
  fontsize = 12,
  titlefontsize = 14,
  gap = 0
)

Arguments

`SerObj`	A Seurat object containing the single-cell RNA-seq data.
`mat`	A matrix object containing the data for generating the heatmap.
`markerVec`	A vector of marker genes to be used for generating the heatmap.
`pairedList`	A list of paired conditions for the first set of markers.
`pairedList2`	A list of paired conditions for the second set of markers.
`labelColumn`	A column name or index in the metadata of SerObj to be used as labels for the heatmap.
`prefix`	A prefix for the output file name.
`adtoutput`	Output type for ADT features. Default is "unpaired".
`rowsplit`	A vector of row splits for the heatmap.
`columnsplit`	A vector of column splits for the heatmap.
`size`	Size of the heatmap. Default is NULL.
`coldend`	A logical value indicating whether to add dendrogram on the columns. Default is TRUE.
`rowdend`	A logical value indicating whether to add dendrogram on the rows. Default is TRUE.
`coldendside`	A character value specifying the side to place the column dendrogram. Default is "bottom".
`rowdendside`	A character value specifying the side to place the row dendrogram. Default is "left".
`fontsize`	Font size for the heatmap labels. Default is 12.
`titlefontsize`	Font size for the title of the heatmap. Default is 14.
`gap`	Gap between the heatmaps. Default is 0.