PseudoMySeur: PseudoMySeur
In eisascience/scCustFx: single-cell custom fxs Package
PseudoMySeur R Documentation
PseudoMySeur
Description
A function to create a pseudo-time trajectory using Monocle on a Seurat object.
Usage
PseudoMySeur(SerObj, features = NULL, removeCells = NULL, removeNoisyFeats = T)
Arguments
SerObj
A Seurat object.
features
A character vector specifying the features (genes) to include in the analysis. If NULL, all features are used.
removeCells
A character vector specifying the cell names to remove from the analysis. If NULL, no cells are removed.
removeNoisyFeats
A logical value indicating whether to remove noisy features. Default is TRUE.
Value
A Monocle CellDataSet object representing the pseudo-time trajectory.
eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.
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| PseudoMySeur | R Documentation |
PseudoMySeur
Description
A function to create a pseudo-time trajectory using Monocle on a Seurat object.
Usage
PseudoMySeur(SerObj, features = NULL, removeCells = NULL, removeNoisyFeats = T)
Arguments
SerObj |
A Seurat object. |
features |
A character vector specifying the features (genes) to include in the analysis. If NULL, all features are used. |
removeCells |
A character vector specifying the cell names to remove from the analysis. If NULL, no cells are removed. |
removeNoisyFeats |
A logical value indicating whether to remove noisy features. Default is TRUE. |
Value
A Monocle CellDataSet object representing the pseudo-time trajectory.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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