RunLiger: RunLiger

In eisascience/scCustFx: single-cell custom fxs Package

RunLiger

Description

RunLiger

Usage

RunLiger(
  SerObj = NULL,
  batch = "batch",
  k = 30,
  runningTime = FALSE,
  verbose = FALSE,
  ...
)

Arguments

SerObj	A seurat SerObj to correct batch effects.
batch	Batch labels.
k	Inner dimension of factorization (number of factors)
runningTime	Return the running time.
verbose	Print verbose.
...	Arguments passed to other methods.

Value

Seurat SerObj with the corrected data in the 'Liger' reduction.

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.