RuntSNE.Matrix: This function to run tsne on matrix

In eisascience/scCustFx: single-cell custom fxs Package

This function to run tsne on matrix

Description

This function to run tsne on matrix

Usage

RuntSNE.Matrix(
  myMat,
  save_path = NULL,
  tsnepp,
  tSNE_n.iter,
  num_threads = 8,
  check_duplicates = F,
  selectFeats = NULL,
  overwrite = F
)

Arguments

myMat	SDA score matrix where cols are the comps and rows are cells
save_path	default NULL ignores saving, or set path to save the tsne rds obj
tsnepp	tSNE preplexity
tSNE_n.iter	N iter for tSNE
num_threads	number of threads
check_duplicates	check for dup rows
selectFeats	select Features from Matrix to run the tSNE

Value

A list of two vector text of enrichments, one for pos one for neg scored cells

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.