SpatialSer.SlideSeq.local: Create a Seurat object from Spatial SlideSeq data

In eisascience/scCustFx: single-cell custom fxs Package

Create a Seurat object from Spatial SlideSeq data

Description

Create a Seurat object from Spatial SlideSeq data

Usage

SpatialSer.SlideSeq.local(
  dge.path = NULL,
  pos.path = NULL,
  celltype.path = NULL,
  celltype.header = "max_cell_type",
  radius = 2450,
  do.plot = T,
  doFilter = T,
  log_nCount.bool = T
)

Arguments

dge.path	path to the expression data
pos.path	path to the position data
celltype.path	path to the cell type data
celltype.header	header for the cell type column in celltype.path
radius	radius for filtering cells
do.plot	logical indicating whether to plot the filtered cells
doFilter	logical indicating whether to filter cells
log_nCount.bool	logical indicating whether to log transform nCount

Value

a Seurat object for Spatial SlideSeq data

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.