gg_tSNE_df: gg_tSNE_df

In eisascience/scCustFx: single-cell custom fxs Package

gg_tSNE_df

Description

Takes a data.frame with tSNE1 and tSNE2 precomputed and plots it.

Usage

gg_tSNE_df(
  DF,
  SavePath = NULL,
  Markers = NULL,
  splitby = NULL,
  verbose = T,
  size = 0.2,
  alpha = 0.6,
  Title = "",
  width = 2000,
  height = 2300,
  pointsize = 20,
  ncol = 4,
  limits = c(0, 1),
  gg_theme = NULL,
  printPlot = T,
  vridis_col_opt = "A"
)

Arguments

DF	A data.frame
SavePath	A data.frame
Markers	A char. vec. that that all must exist in the data.frame.
splitby	a single character which data.frame must contain this value in the cols; the resulting plot is faceted by this.
verbose	if T verbose output is printed
Title	A title else ”
gg_theme	a ggplot theme or NULL

Value

A ggplot

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.