make_RNA_heatmap: Make an RNA heatmap
In eisascience/scCustFx: single-cell custom fxs Package

make_RNA_heatmap

R Documentation

Make an RNA heatmap

Description

Make an RNA heatmap

Usage

make_RNA_heatmap(
  SerObj,
  markerVec,
  labelColumn,
  rowsplit = NULL,
  columnsplit = NULL,
  size = 6,
  clus_cols = TRUE,
  show_column_dend = T,
  clus_rows = TRUE,
  show_row_dend = T,
  fontsize = 10,
  titlefontsize = 10,
  pairedList2 = NULL,
  asGG = F,
  column_names_side = "bottom",
  column_dend_side = "bottom",
  row_names_side = "left",
  row_dend_side = "left",
  assays = "RNA",
  useCDnames = T
)

Arguments

`SerObj`	A Seurat object.
`markerVec`	A vector of marker genes.
`labelColumn`	Column name to use for labeling rows.
`rowsplit`	Column name to split rows by.
`columnsplit`	Column name to split columns by.
`size`	Size of plot.
`fontsize`	Font size for labels.
`titlefontsize`	Font size for plot title.
`asGG`	returns GGplot not list if true
`coldendside`	Dendrogram on the column side.
`rowdendside`	Dendrogram on the row side.