make_RNA_heatmap2: Plot RNA heatmap v2, no re-normalization of the data
In eisascience/scCustFx: single-cell custom fxs Package

make_RNA_heatmap2

R Documentation

Plot RNA heatmap v2, no re-normalization of the data

Description

Plot RNA heatmap v2, no re-normalization of the data

Usage

make_RNA_heatmap2(
  SerObj,
  labelColumn = "ClusterNames_0.2",
  markerVec = NULL,
  assay = "RNA",
  clus_cols = TRUE,
  show_column_dend = T,
  clus_rows = TRUE,
  show_row_dend = T,
  rowsplit = NULL,
  columnsplit = NULL,
  show_heatmap_legend = T,
  size = 4,
  column_names_rot = 45,
  fontsize = 8,
  titlefontsize = 12,
  coldendside = "bottom",
  column_names_side = "bottom",
  row_names_side = "left",
  row_dend_side = "right",
  asGG = T
)

Arguments

`SerObj`	A Seurat object.
`labelColumn`	Column for cell labels.
`markerVec`	Marker genes to use.
`assay`	Assay type.
`clus_cols`	Cluster columns.
`show_column_dend`	Show column dendrogram.
`clus_rows`	Cluster rows.
`show_row_dend`	Show row dendrogram.
`rowsplit`	Split rows.
`columnsplit`	Split columns.
`show_heatmap_legend`	Show heatmap legend.
`size`	Plot size.
`column_names_rot`	Rotation for column names.
`fontsize`	Font size for labels.
`titlefontsize`	Font size for plot title.
`coldendside`	Position of column dendrogram.
`asGG`	Output as ggplot object.