plot3d_seurat: Plot 3D visualization of Seurat object

In eisascience/scCustFx: single-cell custom fxs Package

Plot 3D visualization of Seurat object

Description

Plot 3D visualization of Seurat object

Usage

plot3d_seurat(
  SerObj,
  feature1,
  feature2,
  feature3,
  color_feature = NULL,
  cols = colorRamp(c("navy", "red")),
  plot_title = "",
  slot = "data",
  markerSize = 2
)

Arguments

SerObj	A Seurat object
feature1	The name of the first feature to plot along the x-axis
feature2	The name of the second feature to plot along the y-axis
feature3	The name of the third feature to plot along the z-axis
color_feature	The name of the feature to use for coloring the points (optional)
cols	The color palette to use for the points (optional)
plot_title	The title of the plot (optional)

Value

A 3D plotly visualization of the Seurat object

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.