plot_violin_wpvalue: Plot violin plots with Wilcoxon p-values

In eisascience/scCustFx: single-cell custom fxs Package

Plot violin plots with Wilcoxon p-values

Description

This function generates a plot of violin plots with Wilcoxon p-values for the given feature and groupings in a Seurat object.

Usage

plot_violin_wpvalue(
  SerObj,
  feature,
  group.by = "ident",
  layer = "data",
  GrpFacLevels = NULL,
  assay = "RNA",
  colors = col_vector,
  comparisons = NULL,
  title = "",
  doJitter = T
)

Arguments

SerObj	A Seurat object containing the data.
feature	The feature to plot.
group.by	The grouping variable to use for the plot (default: "ident").
layer	The layer to use for the plot (default: "data").
GrpFacLevels	Optional vector of grouping factor levels to plot.
assay	The assay to use for the plot (default: "RNA").
colors	A vector of colors to use for the plot.
comparisons	A list of pairwise comparisons to perform.
title	A string to use as the plot title.
doJitter	Whether to add jitter to the points (default: TRUE).

Value

A ggplot object.

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.