scrape_arrayexpress: Scrape ArrayExpress metadata and fastq.gz links

In eisascience/scCustFx: single-cell custom fxs Package

Scrape ArrayExpress metadata and fastq.gz links

Description

This function scrapes metadata and fastq.gz links from ArrayExpress for a given accession.

Usage

scrape_arrayexpress(
  accession,
  port = 4562L,
  browser = "firefox",
  LoadWaitSec = 5,
  R1R2only = T,
  splitData = F
)

Arguments

accession

Character string specifying the ArrayExpress accession number.

Value

No direct return value. The function saves metadata as a CSV file and fastq.gz links as a text file.

See Also

[rvest](https://cran.r-project.org/web/packages/rvest/index.html), [RSelenium](https://cran.r-project.org/web/packages/RSelenium/index.html)

Examples

## Not run: 
# Example usage:
scrape_arrayexpress("E-MTAB-1234")

## End(Not run)

eisascience/scCustFx documentation built on June 2, 2025, 3:59 a.m.