Man pages for emreg00/pepper
PErsonalized Perturbation ProfilER
| convert.probe.to.gene.expression | Convert probe level expression to gene level |
| convert.sample.mapping.to.case.control | Convert sample mapping to case control from conditions |
| convert.z.score | Convert z score |
| fetch.expression.data | Fetch expression data from GEO / or given folder |
| find.de.genes | Find differentially expressed genes |
| find.de.genes.limma | Find differentially expressed genes using LIMMA |
| find.de.genes.sam | Find differentially expressed genes using SAM |
| find.de.genes.welch | Find differentially expressed genes using Welch (t-test w/... |
| get.data.set | Get expression data set |
| get.fdr.matrix | Get fdr matrix |
| get.peeps.from.z.matrix | Get peeps from z-score matrix |
| get.platform.annotation | Get array platform annotation for probes |
| get.z.matrix | Get z matrix |
| get.z.score | Get z score |
