convert.probe.to.gene.expression: Convert probe level expression to gene level

In emreg00/pepper: PErsonalized Perturbation ProfilER

Description

Convert probe level expression to gene level

Usage

convert.probe.to.gene.expression(expr, gene.mapping, selection.method = "iqr")

Arguments

expr	Expression matrix.
gene.mapping	Probe-gene mapping.
selection.method	How to handle multiple probes corresponding to the same gene. Defaults to iqr (probe with highest IQR). Other options var (highest variance), med (median of the probes)

Value

a data frame containin gene level expression data

Examples

#expr.gene = convert.probe.to.gene.expression(expr, gene.mapping)

emreg00/pepper documentation built on May 16, 2019, 5:10 a.m.