find.de.genes.welch: Find differentially expressed genes using Welch (t-test w/...

In emreg00/pepper: PErsonalized Perturbation ProfilER

Description

Find differentially expressed genes using Welch (t-test w/ unequal variance) test

Usage

find.de.genes.welch(expr, sample.mapping, states, out.file = NULL,
  state.background = NULL, adjust.method = "BH", cutoff = 0.05)

Arguments

expr	expression matrix.
sample.mapping	Sample - condition mapping.
states	Conditions to be considered as case.
out.file	File to write output. If NULL (default) not used.
state.background	Condition to be considered as control.
adjust.method	Multiple hypothesis testing correction method. Defaults to BH.
cutoff	Adjust p-value cutoff. Defaults to 0.05.

Value

Data frame with results

emreg00/pepper documentation built on May 16, 2019, 5:10 a.m.