convert.sample.mapping.to.case.control: Convert sample mapping to case control from conditions
In emreg00/pepper: PErsonalized Perturbation ProfilER

Description Usage Arguments Value Examples

Convert sample mapping to case control from conditions

1 2	convert.sample.mapping.to.case.control(sample.mapping, states.case, states.control, out.file = NULL)

`sample.mapping`	Sample-condition mapping for the data set.
`states.case`	Conditions to be used as case
`states.control`	Conditions to be used as background
`out.file`	File name to write the converted mapping

a data frame containin sample mapping

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#sample.mapping = convert.sample.mapping.to.case.control(sample.mapping,
# 		    states.control = c("healthy donor"), 
#		    states.case = c("tuberculosis", "latent tuberculosis infection"))

emreg00/pepper documentation built on May 16, 2019, 5:10 a.m.