get.z.score: Get z score
In emreg00/pepper: PErsonalized Perturbation ProfilER
Description
Usage
Arguments
Value
Description
Calculates z-score for each gene in each sample
using the mean and sd over provided control samples.
Usage
1
2
get.z.score(expr, samples.background, method = "mean",
samples.to.exclude = NULL)
Arguments
expr
Expression matrix (probes vs samples).
samples.background
Names of the background (control) samples.
method
Method to calculate the z score, defaults to mean and sd, use median for med and mad.
samples.to.exclude
Names of the samples to be excluded from background (for CV).
Value
Data frame containing z-scores
emreg00/pepper documentation built on May 16, 2019, 5:10 a.m.
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Description Usage Arguments Value
Description
Calculates z-score for each gene in each sample using the mean and sd over provided control samples.
Usage
1 2 | get.z.score(expr, samples.background, method = "mean",
samples.to.exclude = NULL)
|
Arguments
expr |
Expression matrix (probes vs samples). |
samples.background |
Names of the background (control) samples. |
method |
Method to calculate the z score, defaults to mean and sd, use median for med and mad. |
samples.to.exclude |
Names of the samples to be excluded from background (for CV). |
Value
Data frame containing z-scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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