find.de.genes.limma: Find differentially expressed genes using LIMMA
In emreg00/pepper: PErsonalized Perturbation ProfilER
Description
Usage
Arguments
Value
Description
Find differentially expressed genes using LIMMA
Usage
1
2
find.de.genes.limma(expr, sample.mapping, states, out.file = NULL,
state.background = NULL, adjust.method = "BH", cutoff = 0.05)
Arguments
expr
expression matrix.
sample.mapping
Sample - condition mapping.
states
Conditions to be considered as case.
out.file
File to write output. If NULL (default) not used.
state.background
Condition to be considered as control.
adjust.method
Multiple hypothesis testing correction method.
Defaults to BH.
cutoff
Adjust p-value cutoff. Defaults to 0.05
Value
Data frame with results.
emreg00/pepper documentation built on May 16, 2019, 5:10 a.m.
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Description Usage Arguments Value
Description
Find differentially expressed genes using LIMMA
Usage
1 2 | find.de.genes.limma(expr, sample.mapping, states, out.file = NULL,
state.background = NULL, adjust.method = "BH", cutoff = 0.05)
|
Arguments
expr |
expression matrix. |
sample.mapping |
Sample - condition mapping. |
states |
Conditions to be considered as case. |
out.file |
File to write output. If NULL (default) not used. |
state.background |
Condition to be considered as control. |
adjust.method |
Multiple hypothesis testing correction method. Defaults to BH. |
cutoff |
Adjust p-value cutoff. Defaults to 0.05 |
Value
Data frame with results.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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