get.peeps.from.z.matrix: Get peeps from z-score matrix

In emreg00/pepper: PErsonalized Perturbation ProfilER

Description

Returns peeps for each sample in a given z-score matrix.

Usage

get.peeps.from.z.matrix(z, cutoff, convert.to.pvalues, adjust.method = "BH")

Arguments

z	Matrix containing z-scores (genes vs samples), tab separated.
cutoff	Threshold for deciding peeps, either a z-score or adjusted p-value (if convert.to.pvalues=T).
convert.to.pvalues	Flag to convert z-scores to p-values. If TRUE, the z-scores are converted to P-values which are then corrected for multiple hypothesis testing.
adjust.method	P-value correction method (see p.adjust).

Value

Data frame containing sample name and geneid of genes in the peeps

Examples

peeps <- get.peeps.from.z.matrix(z, cutoff=0.05, convert.to.pvalues=T) 

emreg00/pepper documentation built on May 16, 2019, 5:10 a.m.