Man pages for ericjcgalvez/MicrobiomeWrangler
| abundance_calc | Calculate Abundance |
| abundance_plot | Abundance Plot |
| adonis_plot | Adonis Plot |
| aldex2_join_tax | Join ALDEx2 results with taxonomic information |
| aldex2_res_sig | ALDEx2 Significant OTUs |
| alpha_div_calc | Alpha diversity |
| alpha_div_plot | Alpha diversity plot |
| alpha_div_plots | Alpha diversity plotting |
| bacfir_ratio_calc | Calculate bacteroides to firmicutes ratio |
| beta_dist_calc | Beta diversity distances inter/intra samples |
| beta_dist_plot | Plot Beta diversity distances inter/intra samples |
| beta_ordination | Plot beta ordination function |
| calc_rel_abund | Calculate relative abundance |
| classify_randomForest | Random Forest Model |
| comp_diff_abund_analysis | Compare Differential Abundance Analysis |
| data_load | Read 16S amplicon biom file into phyloseq object |
| deseq2_analysis | Differential expression analysis |
| deseq2_plot | Plot DESeq2 analysis |
| hello | Hello, World! |
| ordination_plot | Plot Ordination |
| phyloseq_to_tidy | Export Phyloseq as tidy data frame |
| plot_randomForest_results | Plot Random Forest Results |
| tax_subset | Summarises Phyloseq object to taxlevel and highest n... |
