beta_dist_calc: Beta diversity distances inter/intra samples

In ericjcgalvez/MicrobiomeWrangler:

Beta diversity distances inter/intra samples

Description

This function calculate beta diversity distances inter/intra samples and returns a data frame

Usage

beta_dist_calc(phylo, var, dist, sample_ID = "SampleID")

Arguments

phylo	phyloseq object
var	variable in sample data of the phyloseq object, which should be compared
dist	Filter samples that do not reach this count number
sample_ID	Sample identifier column

Value

data.frame

Examples

data("mice_B6_N")
get_beta_distances(mice_B6_N, var = "Genotype", dist = "unifrac")

ericjcgalvez/MicrobiomeWrangler documentation built on April 14, 2022, 6:33 p.m.