abundance_calc: Calculate Abundance
In ericjcgalvez/MicrobiomeWrangler:
View source: R/beta_diversity_fun.R
abundance_calc R Documentation
Calculate Abundance
Description
Calculate abundance in regards to taxonomic level.
Usage
abundance_calc(phylo, taxlev, ntaxa)
Arguments
phylo
phyloseq object
taxlev
character. taxonomic level
ntaxa
numeric. Number of most abundant taxa, which should be
displayed. Remaining taxa will be summarised in "Others".
Value
data.frame
Examples
data("mice_B6_N")
abundance_calc(mice_B6_N, "Family", 14)
ericjcgalvez/MicrobiomeWrangler documentation built on April 14, 2022, 6:33 p.m.
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View source: R/beta_diversity_fun.R
| abundance_calc | R Documentation |
Calculate Abundance
Description
Calculate abundance in regards to taxonomic level.
Usage
abundance_calc(phylo, taxlev, ntaxa)
Arguments
phylo |
phyloseq object |
taxlev |
character. taxonomic level |
ntaxa |
numeric. Number of most abundant taxa, which should be displayed. Remaining taxa will be summarised in "Others". |
Value
data.frame
Examples
data("mice_B6_N")
abundance_calc(mice_B6_N, "Family", 14)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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