aldex2_res_sig: ALDEx2 Significant OTUs

In ericjcgalvez/MicrobiomeWrangler:

ALDEx2 Significant OTUs

Description

Format ALDEx2 results returning taxonomic information for significant results

Usage

aldex2_res_sig(phylo, aldex2_res, sig = 0.05, all_sig = TRUE)

Arguments

phylo	phyloseq object
aldex2_res	aldex2 object
sig	single numeric. Significance threshold
all_sig	identify which values are siginifcant in both t-test and glm test

Value

data.frame

Examples

data("mice_B6_N")
aldex2_res <- ALDEx2::aldex(mice_B6_N@otu_table,
as.character(sample_data(phylo)$Vendor))
aldex2_res_sig(mice_B6_N, aldex2_res)

ericjcgalvez/MicrobiomeWrangler documentation built on April 14, 2022, 6:33 p.m.