abundance_plot: Abundance Plot

In ericjcgalvez/MicrobiomeWrangler:

Abundance Plot

Description

Abundance Plot

Usage

abundance_plot(
  phylo,
  x,
  taxlev = "Family",
  orderbar = "",
  facetby = "Description",
  ntaxa = 14,
  bar.params = list(),
  facet.params = list(),
  ...
)

Arguments

phylo	Phyloseq object
x	String Variable for x axis
taxlev	String Taxonomic Level
orderbar	String. Numeric Variable of sample_data. The Bars will be ordered in respect to the values
facetby	String Variable the plot should be faceted by
ntaxa	Integer number of taxa which should be displayed
bar.params	Additional parameters for the geom_bar plot
facet.params	Additional parameters for facet_wrap
...

Value

ggplot

Examples

data("mice_B6_N")
abundance_plot(mice_B6_N, "Microbiota")

ericjcgalvez/MicrobiomeWrangler documentation built on April 14, 2022, 6:33 p.m.