deseq2_plot: Plot DESeq2 analysis

In ericjcgalvez/MicrobiomeWrangler:

Plot DESeq2 analysis

Description

Plots results from DESeq2 analysis

Usage

deseq2_plot(
  deseq2_result,
  title,
  label_taxlev,
  top_hits = 10,
  fdr = 0.05,
  fc = 2,
  size = 2,
  alpha = 0.3
)

Arguments

deseq2_result	deseq2 object
title	Title of the plot
label_taxlev	Taxonomic label for the top hits
top_hits	Top hits which should be labled
fdr	single numeric. false discovery rate
fc	single numeric. fold change
size	single numeric
alpha	single numeric.

Value

ggplot object

Examples

data("mice_B6_N")
deseq2_res <- deseq2_analysis(mice_B6_N, "Mircobiota")
deseq2_plot(deseq2_res, "Deseq", "Family")

ericjcgalvez/MicrobiomeWrangler documentation built on April 14, 2022, 6:33 p.m.