comp_diff_abund_analysis: Compare Differential Abundance Analysis
In ericjcgalvez/MicrobiomeWrangler:
comp_diff_abund_analysis R Documentation
Compare Differential Abundance Analysis
Description
Returns matching or missmatching rows from the
Differential Abundance Analysis of different methods
Usage
comp_diff_abund_analysis(x, y, type, by = "OTU")
Arguments
x
data.frame with significant observations as rownames
y
data.frame with significant observations as rownames
by
identifier in both tables
Value
list
Examples
data("mice_B6_N")
deseq2_res <- deseq2_analysis(mice_B6_N, "Mircobiota")
aldex2_res <- ALDEx2::aldex(mice_B6_N@otu_table,
as.character(sample_data(phylo)$Vendor))
comp_diff_abund_analysis(deseq2_res, aldex2_res, type = "match")
ericjcgalvez/MicrobiomeWrangler documentation built on April 14, 2022, 6:33 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| comp_diff_abund_analysis | R Documentation |
Compare Differential Abundance Analysis
Description
Returns matching or missmatching rows from the Differential Abundance Analysis of different methods
Usage
comp_diff_abund_analysis(x, y, type, by = "OTU")
Arguments
x |
data.frame with significant observations as rownames |
y |
data.frame with significant observations as rownames |
by |
identifier in both tables |
Value
list
Examples
data("mice_B6_N")
deseq2_res <- deseq2_analysis(mice_B6_N, "Mircobiota")
aldex2_res <- ALDEx2::aldex(mice_B6_N@otu_table,
as.character(sample_data(phylo)$Vendor))
comp_diff_abund_analysis(deseq2_res, aldex2_res, type = "match")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.