Files in eriqande/fullsniplings
Full sibling reconstruction from SNP data

.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R R/assess_sibships.R R/colony_funcs.R R/fullsniplings.R R/geno_qty_array.R R/mcmc1.R R/result_plots.R R/run_mcmc.R R/simulation.R R/variable_prep.R README.md TERMS.md
chinook_chain.rda
data/fs_dev_test_data.rda
fullsniplings.Rproj
inst/chinook_chain_results.rda
inst/data_files/colony/AA_PairX1.BestFSFamily
inst/data_files/colony/FRH-sibs-for-pipeline.Rda
inst/dev_vignettes/.gitignore
inst/dev_vignettes/building_mcmc_function.Rmd inst/dev_vignettes/dev_test_data.Rmd inst/dev_vignettes/full-sibling-chinook-mcmc.Rmd inst/dev_vignettes/function_flow.Rmd inst/scripts_during_dev/observe_mcmc.R man/C_full_sibling_pair_gfreqs.Rd man/NamizeSibs.Rd man/SlurpSibships.Rd man/alle_freqs.Rd man/ave_err_commission_and_ommission.Rd man/count_genos.Rd man/find_high_logl_sib_pairs.Rd man/full_sib_mcmc_initialize.Rd man/full_sibling_pair_gfreqs.Rd man/fullsniplings.Rd man/geno_post_c.Rd man/geno_posterior.Rd man/geno_qty_array.Rd man/genos_to_indicators.Rd man/get_indiv_geno_lik.Rd man/get_snp_genos.Rd man/gfreqs_from_afreqs.Rd man/gibbs_update_one_indiv_in_place.Rd man/gqa_natural.Rd man/greedy_partition.Rd man/hashable_sibships.Rd man/high_logl_pairs.Rd man/initialize_sib_list_to_singletons.Rd man/kid_prongs_times_ind_likelihoods.Rd man/lik_array_from_simple_geno_err.Rd man/make_IFS_from_FSL.Rd man/make_KidProngs_from_FSL_and_PMMFS.Rd man/make_LMMFS_from_FSL_and_LMMI.Rd man/make_PMMFS_from_FSL_and_LMMFS.Rd man/multi_kid_marriage_likelihoods.Rd man/ordered_fsl.Rd man/per_kid_marriage_likelihoods.Rd man/possible_sibgroups.Rd man/prep_all_variables.Rd man/print.geno_qty_array.Rd man/pseudo_prior.Rd man/run_mcmc.Rd man/sib_result_plot.Rd man/simulate_sib_pair_logls.Rd man/sort_visited_sibgroups.Rd man/table_sibsizes.Rd man/trans_probs.Rd man/unrelated_pair_gfreqs.Rd man/update_marriage_likelihoods_in_place.Rd man/update_marriage_node_kid_prongs_in_place.Rd man/update_marriage_posteriors_in_place.Rd
src/RcppExports.cpp
src/fullsniplings.cpp
eriqande/fullsniplings documentation built on May 13, 2017, 8:21 p.m.