Files in eriqande/fullsniplings
Full sibling reconstruction from SNP data
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/assess_sibships.R
R/colony_funcs.R
R/fullsniplings.R
R/geno_qty_array.R
R/mcmc1.R
R/result_plots.R
R/run_mcmc.R
R/simulation.R
R/variable_prep.R
README.md
TERMS.md
chinook_chain.rda
data/fs_dev_test_data.rda
fullsniplings.Rproj
inst/chinook_chain_results.rda
inst/data_files/colony/AA_PairX1.BestFSFamily
inst/data_files/colony/FRH-sibs-for-pipeline.Rda
inst/dev_vignettes/.gitignore
inst/dev_vignettes/building_mcmc_function.Rmd
inst/dev_vignettes/dev_test_data.Rmd
inst/dev_vignettes/full-sibling-chinook-mcmc.Rmd
inst/dev_vignettes/function_flow.Rmd
inst/scripts_during_dev/observe_mcmc.R
man/C_full_sibling_pair_gfreqs.Rd
man/NamizeSibs.Rd
man/SlurpSibships.Rd
man/alle_freqs.Rd
man/ave_err_commission_and_ommission.Rd
man/count_genos.Rd
man/find_high_logl_sib_pairs.Rd
man/full_sib_mcmc_initialize.Rd
man/full_sibling_pair_gfreqs.Rd
man/fullsniplings.Rd
man/geno_post_c.Rd
man/geno_posterior.Rd
man/geno_qty_array.Rd
man/genos_to_indicators.Rd
man/get_indiv_geno_lik.Rd
man/get_snp_genos.Rd
man/gfreqs_from_afreqs.Rd
man/gibbs_update_one_indiv_in_place.Rd
man/gqa_natural.Rd
man/greedy_partition.Rd
man/hashable_sibships.Rd
man/high_logl_pairs.Rd
man/initialize_sib_list_to_singletons.Rd
man/kid_prongs_times_ind_likelihoods.Rd
man/lik_array_from_simple_geno_err.Rd
man/make_IFS_from_FSL.Rd
man/make_KidProngs_from_FSL_and_PMMFS.Rd
man/make_LMMFS_from_FSL_and_LMMI.Rd
man/make_PMMFS_from_FSL_and_LMMFS.Rd
man/multi_kid_marriage_likelihoods.Rd
man/ordered_fsl.Rd
man/per_kid_marriage_likelihoods.Rd
man/possible_sibgroups.Rd
man/prep_all_variables.Rd
man/print.geno_qty_array.Rd
man/pseudo_prior.Rd
man/run_mcmc.Rd
man/sib_result_plot.Rd
man/simulate_sib_pair_logls.Rd
man/sort_visited_sibgroups.Rd
man/table_sibsizes.Rd
man/trans_probs.Rd
man/unrelated_pair_gfreqs.Rd
man/update_marriage_likelihoods_in_place.Rd
man/update_marriage_node_kid_prongs_in_place.Rd
man/update_marriage_posteriors_in_place.Rd
src/RcppExports.cpp
src/fullsniplings.cpp
