high_logl_pairs: return the high-sib-pair-logl indivs for each indiv
In eriqande/fullsniplings: Full sibling reconstruction from SNP data
Description
I wrote this to see how much faster I could implement the functionality of find_high_logl_sib_pairs
using Rcpp. find_high_logl_sib_pairs is painfully slow, and I think this should be much faster
Usage
1
high_logl_pairs(FSP, UPF, G, loglV)
Arguments
FSP
a 9 x L matrix (3 x 3 x L) of expected genotype frequencies of a full sibling pair,
but we pass it in is a vector.
UPF
a 9 x L matrix of expected genotype frequencies of an unrelated pair, which we also
pass in as a vector.
G
an L x N matrix of 0, 1, or 2 or NA giving the genotypes of the individuals
loglV
the cutoff point above which you will accept the pairs.
eriqande/fullsniplings documentation built on May 16, 2019, 8:45 a.m.
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Description
I wrote this to see how much faster I could implement the functionality of find_high_logl_sib_pairs using Rcpp. find_high_logl_sib_pairs is painfully slow, and I think this should be much faster
Usage
1 | high_logl_pairs(FSP, UPF, G, loglV)
|
Arguments
FSP |
a 9 x L matrix (3 x 3 x L) of expected genotype frequencies of a full sibling pair, but we pass it in is a vector. |
UPF |
a 9 x L matrix of expected genotype frequencies of an unrelated pair, which we also pass in as a vector. |
G |
an L x N matrix of 0, 1, or 2 or NA giving the genotypes of the individuals |
loglV |
the cutoff point above which you will accept the pairs. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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