full_sibling_pair_gfreqs: returns genotype probabilities of a pair of full siblings
In eriqande/fullsniplings: Full sibling reconstruction from SNP data
Description
Given that the parents are unrelated and have expected genotype
frequencies given in the 3 x L array gf, and given genotypin error
rates specified for each locus mu (will recycle) this function returns
the probablities of the 9 possible genotypes (at all L loci) of
a pair of full siblings in the population. This can be done entirely in R
but it would be hard to come back to it and understand what it is doing,
so I am going to do much of it with a call to an Rcpp function
Usage
1
full_sibling_pair_gfreqs(gf, mu = 0)
Arguments
gf
array of genotype frequencies
mu
genotyping error rates
eriqande/fullsniplings documentation built on May 16, 2019, 8:45 a.m.
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Description
Given that the parents are unrelated and have expected genotype frequencies given in the 3 x L array gf, and given genotypin error rates specified for each locus mu (will recycle) this function returns the probablities of the 9 possible genotypes (at all L loci) of a pair of full siblings in the population. This can be done entirely in R but it would be hard to come back to it and understand what it is doing, so I am going to do much of it with a call to an Rcpp function
Usage
1 | full_sibling_pair_gfreqs(gf, mu = 0)
|
Arguments
gf |
array of genotype frequencies |
mu |
genotyping error rates |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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