alle_freqs: counts alleles from a geno_counts matrix
In eriqande/fullsniplings: Full sibling reconstruction from SNP data

Description Usage Arguments Value Examples

counts alleles from a geno_counts matrix

1	alle_freqs(x, proportion = T, smidge = 0.5)

`x`	the geno counts matrix
`proportion`	if false it returns the counts. if true the proportions (summing to one)
`smidge`	small amount to add to count of each allele (could be useful if there are zero counts on some alleles)

A matrix with 2 rows (corresponding to alleles 0 and 1) and L columns.

snp_genos <- get_snp_genos(fs_dev_test_data$plain_snp_data)
snp_indics <- genos_to_indicators(g = snp_genos$mat)
geno_counts <- count_genos(snp_indics)
afreqs <- alle_freqs(geno_counts)