does a gibbs update of the full sibling group of individual Ind
1 2 | gibbs_update_one_indiv_in_place(FSL, IFS, LMMI, LMMFS, PMMFS, KidProngs, Pile,
MatPile, AFSL, Gfreqs, UPG, TP, IndLiks, Ind)
|
FSL |
list of integer vectors. Each component is a list of two componontes: |
IFS |
individual full siblings group vector. A vector such that element i contains the
base-0 index of the sibship to which the individual with index i belongs.
and PMMFS, and KidProngs |
LMMI |
Likelihood matrix of marriages given individuals. |
LMMFS |
Likelihood matrix of marriages given full sibships. |
PMMFS |
Posterior matrix of marriages given full sibships. |
KidProngs |
Posterior predictives for the next individuals to be sampled from a full sibship. |
Pile |
An integer vector that we will use as a stack to hold the indices of empty FSL list elements that we can put newly formed sibships into |
MatPile |
An integer vector that is parallel to Pile that holds the corresponding column of LMMFS that go along with the elements of Pile. can be renewed. |
AFSL |
The acceptable full siblings list. Component i is a vector of the base-0 indices of the individuals that indiv i has high full-sibling LOD with. |
Gfreqs |
The genotype frequencies. |
UPG |
Unrelated Pair Genotype Frequencies. |
TP |
Transmission probabilities |
IndLiks |
Individual likelihoods |
Ind |
the index of the individual to be updated. |
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