Originally designed to map Genomic and RNA reads onto MaxDiversity (MD) regions found on contigs generated by the pAss pipeline. mapBlat will now be officially integrated into the omics, MetamapsDB ecosystem.
parser scripts
generate node and rel CSVs
links to
| Step | Description | Output |
| 1 | Diamond blastx
contigs against NR-protein | DAA file |
| 2 |
$ ./tools/blast2lca -i <DAA file> -f DAA -o <output file> -g2t /export2/home/uesu/simulation_fr_the_beginning/data/classifier/gi2taxid.refseq
/path/to/megan/rootDir/
xvfb-run
if it complatins about not finding a displayFor an example for the pipeline use see example.R in the R/
folder.
[Still under construction]
Required Files:
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