Man pages for etheleon/mapBlat
What the package does (one line)

annotateContigs.taxonomyAssigns
blast2lcaInblast2lcaIN reads in and executes perl
buildIntervalsBuilds intervals based on a stringSet Object
countInsidecounts the rolling abundance scores
countNXXAssigns the a NXX to KOs
DBprepDBprep prepares input for NEO4J database
distillReturns the contigs and their assoc cDNA rpkms required for...
extendRangeExtends MAX diversity region to capture mRNAs mapping to ends...
extractLocextractLoc: extracts MSA information from the header of the...
findPerlfindPerl finds the path to the executable
make.map.tablemake.map.table takes the output from map function (mapping...
mapperMap: maps gDNA and mRNA to contigs
spanningOrNotDetermines nature of contigs wrt to Max Diversity Region; is...
upMSAMSA of contigs against the MSA of reference sequences
etheleon/mapBlat documentation built on May 13, 2017, 8:27 p.m.