countNXX: Assigns the a NXX to KOs

Description Usage Arguments Value

Description

countNXX takes the RPKM expression value and returns a NXX value describing the number of contigs required to account for X

Usage

1
countNXX(countDF, perc = seq(0.1, 1, 0.05), abundanceCol = "rpkm_cDNA")

Arguments

countDF

input data.frame

perc

the percentages given as a sequence of

abundanceCol

abundance

Value

a data.frame obj containing the NXX values. We define NXX as metric for describing the number of genes required to satisfy X


etheleon/mapBlat documentation built on May 16, 2019, 9:04 a.m.