upMSA: MSA of contigs against the MSA of reference sequences

Description Usage Format

Description

1600 contigs aligned against all references sequences in ko:K00001, alcohol dehydrogenase The best match chosen then reMSA according to MSA of reference sequences.

Usage

1

Format

A DNAStringSet instance of length 1600

Dependencies

Requires the Biostrings package from Bioconductor

Names

Names of the contigs which the sequences are aligned to


etheleon/mapBlat documentation built on May 16, 2019, 9:04 a.m.