mapper: Map: maps gDNA and mRNA to contigs
In etheleon/mapBlat: What the package does (one line)
Description
Usage
Arguments
Value
Description
Convert converts FASTQ input to FASTA format using perl Bio::SeqIO.
Runs BLAT -fastMap in fast mode and outputs the matches.
Matches are redundant ie. Reads are matched to more than one contig.
Usage
1
mapper(blatOutputFile)
Arguments
blatOutputFile
the output file to store results of blat
Value
a data.frame containing the readID the match and the blat information
etheleon/mapBlat documentation built on May 16, 2019, 9:04 a.m.
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Description Usage Arguments Value
Description
Convert converts FASTQ input to FASTA format using perl Bio::SeqIO.
Runs BLAT -fastMap in fast mode and outputs the matches.
Matches are redundant ie. Reads are matched to more than one contig.
Usage
1 | mapper(blatOutputFile)
|
Arguments
blatOutputFile |
the output file to store results of blat |
Value
a data.frame containing the readID the match and the blat information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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