Man pages for etheleon/mapBlat
What the package does (one line)
| annotateContigs.taxonomy | Assigns |
| blast2lcaIn | blast2lcaIN reads in and executes perl |
| buildIntervals | Builds intervals based on a stringSet Object |
| countInside | counts the rolling abundance scores |
| countNXX | Assigns the a NXX to KOs |
| DBprep | DBprep prepares input for NEO4J database |
| distill | Returns the contigs and their assoc cDNA rpkms required for... |
| extendRange | Extends MAX diversity region to capture mRNAs mapping to ends... |
| extractLoc | extractLoc: extracts MSA information from the header of the... |
| findPerl | findPerl finds the path to the executable |
| make.map.table | make.map.table takes the output from map function (mapping... |
| mapper | Map: maps gDNA and mRNA to contigs |
| spanningOrNot | Determines nature of contigs wrt to Max Diversity Region; is... |
| upMSA | MSA of contigs against the MSA of reference sequences |
