API for explodecomputer/simulateGP
Functions for Simulating Genotype-Phenotype Relationships
| Global functions | |
|---|---|
| %>% | Man page |
| add_u | Man page Source code |
| allele_frequency | Man page Source code |
| arbitrary_map | Man page Source code |
| ascertain_samples | Man page Source code |
| asymp_cov_linear_linear | Source code |
| asymp_cov_linear_logistic | Source code |
| asymp_var_linear | Source code |
| asymp_var_logistic | Source code |
| best_model | Source code |
| calculate_overlap | Source code |
| calculate_overlap_2 | Source code |
| choose_effects | Man page Source code |
| contingency | Man page Source code |
| correlated_binomial | Man page |
| create_system | Man page Source code |
| draw_betas_multi_sample | Source code |
| epistasis_problem | Source code |
| epistasis_problem.run1 | Source code |
| epistasis_problem.simulate_system | Source code |
| estimate_system_effects | Man page Source code |
| expected_mse | Man page Source code |
| expected_se | Man page Source code |
| expected_ssx | Man page Source code |
| fast_assoc | Man page Source code |
| generate_gwas_params | Man page Source code |
| generate_gwas_ss | Man page Source code |
| generate_gwas_ss_1 | Man page |
| generate_ld_matrices | Source code |
| generate_ld_matrices_slow | Source code |
| generate_ldobj | Man page Source code |
| get_counts | Source code |
| get_effs | Man page Source code |
| get_ld | Man page Source code |
| get_population_allele_frequency | Man page Source code |
| get_regions | Source code |
| get_regions_from_ldobjdir | Man page Source code |
| greedy_remove | Source code |
| gwas | Man page Source code |
| gx_to_gp | Man page Source code |
| hap_freqs | Man page |
| init_parameters | Man page Source code |
| ld_multiplier | Source code |
| ldetect | Man page |
| logistic_assoc | Source code |
| lor_to_rsq | Man page Source code |
| make_geno | Man page Source code |
| make_mvdat | Man page Source code |
| make_phen | Man page Source code |
| merge_exp_out | Man page Source code |
| range01 | Man page Source code |
| read_ld_matrices | Source code |
| read_ldobjdir | Man page |
| recode_dat | Man page Source code |
| recode_dat_intercept | Man page Source code |
| recode_dat_simple | Man page Source code |
| risk_cross_plot | Man page Source code |
| risk_simulation | Man page Source code |
| sample_beta | Man page Source code |
| sample_system_effects | Man page Source code |
| simulateGP | Man page |
| simulateGP-package | Man page |
| simulate_geno | Man page |
| simulate_haplotypes | Man page |
| simulate_population | Man page Source code |
| simulategp | Man page |
| stuff | Man page |
| summary_set | Man page Source code |
| test_ldobj | Man page Source code |
| test_system | Man page Source code |
| variant_reference | Source code |
| write_ld_matrices | Source code |
| y_to_binary | Man page Source code |
