lor_to_rsq: Estimate proportion of variance of liability explained by SNP...
In explodecomputer/simulateGP: Functions for Simulating Genotype-Phenotype Relationships
View source: R/rsq_liability.r
lor_to_rsq R Documentation
Estimate proportion of variance of liability explained by SNP in general population
Description
This uses equation 10 in Genetic Epidemiology 36 : 214–224 (2012)
Usage
lor_to_rsq(b, af, ncase, ncontrol, prevalence, model = "logit")
Arguments
b
Log odds ratio
af
allele frequency
ncase
Number of cases
ncontrol
number of controls
prevalence
prevalence
model
Is the effect size estiamted in "logit" (default) or "probit" model
Value
Rsq
explodecomputer/simulateGP documentation built on April 3, 2024, 2:38 a.m.
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View source: R/rsq_liability.r
| lor_to_rsq | R Documentation |
Estimate proportion of variance of liability explained by SNP in general population
Description
This uses equation 10 in Genetic Epidemiology 36 : 214–224 (2012)
Usage
lor_to_rsq(b, af, ncase, ncontrol, prevalence, model = "logit")
Arguments
b |
Log odds ratio |
af |
allele frequency |
ncase |
Number of cases |
ncontrol |
number of controls |
prevalence |
prevalence |
model |
Is the effect size estiamted in "logit" (default) or "probit" model |
Value
Rsq
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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