API for explodecomputer/simulateGP
Functions for Simulating Genotype-Phenotype Relationships

Global functions
%>% Man page
add_u Man page Source code
allele_frequency Man page Source code
ascertain_samples Man page Source code
asymp_cov_linear_linear Source code
asymp_cov_linear_logistic Source code
asymp_var_linear Source code
asymp_var_logistic Source code
best_model Source code
calculate_overlap Source code
calculate_overlap_2 Source code
choose_effects Man page Source code
contingency Man page Source code
correlated_binomial Man page
create_system Man page Source code
draw_betas_multi_sample Source code
epistasis_problem Source code
epistasis_problem.run1 Source code
epistasis_problem.simulate_system Source code
estimate_system_effects Man page Source code
expected_mse Man page Source code
expected_se Man page Source code
expected_ssx Man page Source code
fast_assoc Man page Source code
generate_gwas_params Man page Source code
generate_gwas_ss Man page Source code
generate_gwas_ss_1 Man page
generate_ld_matrices Source code
generate_ld_matrices_slow Source code
generate_ldobj Man page Source code
get_counts Source code
get_effs Man page Source code
get_ld Man page Source code
get_population_allele_frequency Man page Source code
get_regions Source code
get_regions_from_ldobjdir Man page Source code
greedy_remove Source code
gwas Man page Source code
gx_to_gp Man page Source code
hap_freqs Man page
init_parameters Man page Source code
ld_multiplier Source code
ldetect Man page
logistic_assoc Source code
lor_to_rsq Man page Source code
make_geno Man page Source code
make_mvdat Man page Source code
make_phen Man page Source code
merge_exp_out Man page Source code
range01 Man page Source code
read_ld_matrices Source code
read_ldobjdir Man page
recode_dat Man page Source code
recode_dat_intercept Man page Source code
recode_dat_simple Man page Source code
risk_cross_plot Man page Source code
risk_simulation Man page Source code
sample_beta Man page Source code
sample_system_effects Man page Source code
simulateGP Man page
simulateGP-package Man page
simulate_geno Man page
simulate_haplotypes Man page
simulate_population Man page Source code
simulategp Man page
stuff Man page
summary_set Man page Source code
test_ldobj Man page Source code
test_system Man page Source code
variant_reference Source code
write_ld_matrices Source code
y_to_binary Man page Source code
explodecomputer/simulateGP documentation built on Feb. 17, 2024, 10:43 a.m.