get_ld: Get LD matrix for a specified region from bfile reference...

In explodecomputer/simulateGP: Functions for Simulating Genotype-Phenotype Relationships

Get LD matrix for a specified region from bfile reference panel

Description

Get LD matrix for a specified region from bfile reference panel

Usage

get_ld(
  chr,
  from,
  to,
  bfile,
  plink_bin = genetics.binaRies::get_plink_binary(),
  nref = NULL
)

Arguments

chr	Chromosome
from	from bp
to	to bp
bfile	LD reference panel
plink_bin	Plink binary default=genetics.binaRies::get_plink_binary()
nref	Sample size of reference panel

Value

List of LD matrix and map info including MAF

explodecomputer/simulateGP documentation built on April 3, 2024, 2:38 a.m.