Files in explodecomputer/simulateGP

Functions for Simulating Genotype-Phenotype Relationships

.Rbuildignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/epistasis.r R/fast_assoc.r R/format_mr.r R/generate_individuals.r R/globals.r R/ld.r R/ldetect.r R/mr_system.r R/risk.r R/rsq_liability.r R/simulateGP-package.r R/summary_data.R R/summary_set.r R/theoretical_gwas.R R/utils-pipe.R README.md

_pkgdown.yml

codecov.yml

data/ldetect.rdata

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inst/extdata/ldetect/AFR.bed

inst/extdata/ldetect/ASN.bed

inst/extdata/ldetect/EUR.bed

inst/extdata/ldobj_5_141345062_141478055.rds

inst/sandpit/disease_rsq.r inst/sandpit/dunno.r inst/sandpit/expected_gwas.r inst/sandpit/expected_gwas2.r inst/sandpit/risk.r inst/sandpit/simulate_from_dag.r inst/sandpit/system.r man/add_u.Rd man/allele_frequency.Rd man/arbitrary_map.Rd man/ascertain_samples.Rd man/choose_effects.Rd man/contingency.Rd man/correlated_binomial.Rd man/create_system.Rd man/estimate_system_effects.Rd man/expected_mse.Rd man/expected_se.Rd man/expected_ssx.Rd man/fast_assoc.Rd man/generate_gwas_params.Rd man/generate_gwas_ss.Rd man/generate_gwas_ss_1.Rd man/generate_ldobj.Rd man/get_effs.Rd man/get_ld.Rd man/get_population_allele_frequency.Rd man/get_regions_from_ldobjdir.Rd man/gwas.Rd man/gx_to_gp.Rd man/hap_freqs.Rd man/init_parameters.Rd man/ldetect.Rd man/lor_to_rsq.Rd man/make_geno.Rd man/make_mvdat.Rd man/make_phen.Rd man/merge_exp_out.Rd man/pipe.Rd man/range01.Rd man/read_ldobjdir.Rd man/recode_dat.Rd man/recode_dat_intercept.Rd man/recode_dat_simple.Rd man/risk_cross_plot.Rd man/risk_simulation.Rd man/sample_beta.Rd man/sample_system_effects.Rd man/simulateGP-package.Rd man/simulate_geno.Rd man/simulate_haplotypes.Rd man/simulate_population.Rd man/stuff.Rd man/summary_set.Rd man/test_ldobj.Rd man/test_system.Rd man/y_to_binary.Rd tests/testthat.R tests/testthat/test_fastassoc.R tests/testthat/test_format_mr.R tests/testthat/test_generate_individuals.R tests/testthat/test_ld.R tests/testthat/test_mr_system.r tests/testthat/test_summary_set.R tests/testthat/test_theoreticalgwas.R

vignettes/.gitignore

vignettes/2smr.png

vignettes/generate_ldobj.Rmd vignettes/gwas_summary_data.Rmd vignettes/gwas_summary_data_ld.Rmd vignettes/ld_matrices.Rmd vignettes/mr_dgp.rmd

vignettes/mrdag.png

vignettes/sample_overlap.Rmd vignettes/sample_overlap_theory.Rmd vignettes/simplemr.Rmd vignettes/simulate_gwas.Rmd vignettes/susie_check.Rmd vignettes/twosamplemr.Rmd vignettes/weak_instruments.Rmd

explodecomputer/simulateGP documentation built on April 3, 2024, 2:38 a.m.