API for eyzhao/SignIT
What the Package Does (One Line, Title Case)
| Global functions | |
|---|---|
| SignIT | Man page |
| SignIT-package | Man page |
| all_snv_mutation_types | Man page Source code |
| base_complement | Man page Source code |
| collapse_mutation_types | Man page Source code |
| collapse_signatures_by_bleed | Man page Source code |
| collapse_signatures_by_bleed_all_solutions | Man page Source code |
| compute_population_bic | Man page Source code |
| compute_population_model_log_likelihood | Man page Source code |
| compute_population_signatures_bic | Man page Source code |
| compute_population_signatures_log_likelihood | Man page Source code |
| compute_population_signatures_waic | Man page Source code |
| compute_signatures_waic | Man page Source code Source code |
| get_density_mode | Man page Source code |
| get_exposure_pairwise_correlations | Man page Source code |
| get_exposure_summary_table | Man page Source code |
| get_exposures | Man page Source code |
| get_os | Man page Source code |
| get_population_parameter_estimates | Man page Source code |
| get_population_signatures | Man page Source code |
| get_populations | Man page Source code |
| get_reference_signatures | Man page Source code |
| get_signature_bleed_graph | Man page Source code |
| get_signature_names | Man page Source code |
| get_snv_mutation_type | Man page Source code |
| get_trinucleotide | Man page Source code |
| get_vaf_correction | Man page Source code |
| map_phi_to_population | Man page Source code |
| map_phi_to_signature | Man page Source code |
| map_population_signatures | Man page Source code |
| mcmc_exposures_as_matrix | Man page Source code |
| mutation_types_match | Man page Source code |
| mutations_to_catalog | Man page Source code |
| normalize_reference_signatures | Man page Source code |
| parse_stan_output | Man page Source code |
| plot_bleed_interactions | Man page Source code |
| plot_exposure_chain | Man page Source code |
| plot_exposure_posteriors | Man page Source code |
| plot_exposure_posteriors_bleed | Man page Source code |
| plot_nnls_solution | Man page |
| plot_population_signatures | Man page Source code |
| plot_signature_pairwise_bleed | Man page Source code |
| plot_two_signature_hexplot | Man page Source code |
| reference_signatures_as_matrix | Man page Source code |
| reverse_factor_levels | Man page Source code |
| reverse_factor_ranks | Man page Source code |
| rotate_x_axis_labels | Man page Source code |
| select_n_populations | Man page Source code |
| signature_present | Man page Source code |
| stitch_mutation_types | Man page Source code |
| subset_reference_signatures | Man page Source code |
| summarise_population_signatures | Man page Source code |
| trim_signature_names | Man page Source code |
