convert_lna2: Convert an LNA path from the counting process on transition...

In fintzij/stemr: Stochastic Epidemic Model Simulation and Estimation

Convert an LNA path from the counting process on transition events to the compartment densities on their natural scale, making the conversion in place for an existing census matrix.

Description

Convert an LNA path from the counting process on transition events to the compartment densities on their natural scale, making the conversion in place for an existing census matrix.

Usage

convert_lna2(path, flow_matrix, init_state, statemat)

Arguments

path	matrix containing the LNA path in terms of the counting processes on transition events
flow_matrix	stoichiometry matrix (the transpose of the flow matrix)
init_state	initial compartment counts on the natural scale
statemat	matrix where the compartment counts should be written The process can be re-expressed by left-multiplying each row in the path matrix by the stoichiometry matrix: X_t = A'φ(t, N_t).

fintzij/stemr documentation built on March 25, 2022, 12:25 p.m.